During nail biting and thumb sucking, they increase association of microorganisms such as Escherichia coli, and other parasite intestinal infections. It seems, the nail biting introduce wide variety of microbes to the gut microbiome. The immune stimulation secondary to the exchange of maternal oral bacteria might protect against allergies.
If the hygiene hypothesis is correct, then the nail biting and thumb sucking would reduce the risk of allergies. Hygiene hypothesis stated that childhood exposure to the microbial organisms reduce the risk of developing allergic diseases. Though the effect of thumb sucking and nail biting habits are likely to increase the microbial exposure, their direct effect on allergies are still unknown.
, , Thumb-Sucking, Nail-Biting, and Atopic Sensitization, Asthma, and Hay Fever", Pediatrics.
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